Hi. Thanks for sending the output.txt...
On 13/02/2014 06:15, Requena Sanchez, Natalia (BOTANIK) wrote:
> I copy here below the output.text file I found. It is somehow odd because it 
> says Jalview version 2.4 which was the old version I had in my old laptop 
> 10.5.8 and that did not run in this computer….. can it be that the old 
> version is still there? ummm, I thought I had deleted it when installing the 
> new one.
Yes - you're right - that's definitely an old output file.

I assumed you installed Jalview via the InstallAnywhere installer.. 
Jalview launched in that way should log every error to output.txt. Have 
a look at the timestamp - that should show whether it is the right 
'output.txt' file !  If nothing else, try a search in spotlight.

I suggest you follow the instructions at http://www.jalview.org/node/44 
to launch Jalview, open the Jalview Java console, shut down Jalview 
(this bit is important) .. and then launch it again to get the console 
log for Jalview. This should give me enough information to diagnose the 
problem.

There's one other thing that might help. If you've migrated your home 
from an old computer, your .jalview_properties file might have 
old/invalid settings. Shut down any jalviews that are running, then open 
a terminal window and type

mv ~/.jalview_properties ~/.jalview_properties_old

Then try launching Jalview again.

Jim.

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