Hi Rafael.
We're actually working on a new dialog for doing exactly this kind of
operation. It currently works on the alignment annotation rows, but
could easily be extended to work on other (non-visible) column wise
properties such as gap percentage.
Try the jalview development version and look under the 'Select' menu to
try out the new dialog. Any comments/requests can be added over at
http://issues.jalview.org/browse/JAL-1553
Jim.
On 13/01/2015 13:09, Rafael Fernández Leiro wrote:
Hi all,
Sorry to bring this up from 2011
####
http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-April/000581.html
>/ Hi everyone,
/>/
/>/ Sorry if this is something that has been discussed before, I looked
/>/ for it and couldn't find any info.
/>/
/>/ In large multiple alignments, it can be convenient to hide positions
/>/ (columns) where more than a certain fraction of sequences have gaps.
/>/ I've seen that option in other editors (e.g. MUST). Is there a way to
/>/ do this in Jalview? If not, does anyone think it would be worthwhile
/>/ to implement?/
/####/
I am having the same problem now and I can’t figure out how to do this.
Has anything been done in this direction?
Right now I am using a simple script (awk/sed) to remove columns of
gaps from the alignment and loading multiple files into jalview (ie:
original file + gaps over 90% deleted + gaps over 75% deleted). Does
anybody have a better solution?
Thanks very much in advance
Rafa
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