Hi Alessandra.
From your image, it looks like the ID width margin is not being set
automatically. There was a feature introduced to set the margin
automatically, or keep it as a fixed width for flipbook style alignment
browsing (where you don't want the margin to move around).
We'll take a look at it and get back to you. Could you let me know which
version of Jalview you're running in your code ?
Jim
On 09/06/2015 09:24, Alessandra Gastaldello wrote:
Hello,
this is my problem:
I used a jalview batch to incorporate jalview into an alignment program.
I put some parameters as -colour, and -png to safe the resulting file
as image.
All is ok except in the png files there is a superimposition of some
letters and numbers at the beginning of the images, as if the images
were not large enough to display correctly.
I can't find a way to set up some parameters to try to have images
with different dimensions.
To save in svg doesn't change the result.
If I use jalview desktop and I save the box as png image all is ok,
not superimposition, but i can't use it because I need to include
jalview into my code.
Any suggestion to set some parameters ?
I attached an image as example. As you can see numbers in the left
side are not display correctly.
Thanks.
Alessandra
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