Hi again, Alessandra.
Append the following lines to your jalview properties file:
FIGURE_AUTOIDWIDTH=true
RIGHT_ALIGN_IDS=false
(also make sure there's a return or blank line at the end of the
properties file).
This will tell jalview to automatically compute the margin to fit in all
sequence IDs, and also right align them so that the start/end numbering
appear in the same place each time.
Jim.
On 09/06/2015 09:53, Jim Procter wrote:
Hi Alessandra.
From your image, it looks like the ID width margin is not being set
automatically. There was a feature introduced to set the margin
automatically, or keep it as a fixed width for flipbook style
alignment browsing (where you don't want the margin to move around).
We'll take a look at it and get back to you. Could you let me know
which version of Jalview you're running in your code ?
Jim
On 09/06/2015 09:24, Alessandra Gastaldello wrote:
Hello,
this is my problem:
I used a jalview batch to incorporate jalview into an alignment program.
I put some parameters as -colour, and -png to safe the resulting file
as image.
All is ok except in the png files there is a superimposition of some
letters and numbers at the beginning of the images, as if the images
were not large enough to display correctly.
I can't find a way to set up some parameters to try to have images
with different dimensions.
To save in svg doesn't change the result.
If I use jalview desktop and I save the box as png image all is ok,
not superimposition, but i can't use it because I need to include
jalview into my code.
Any suggestion to set some parameters ?
I attached an image as example. As you can see numbers in the left
side are not display correctly.
Thanks.
Alessandra
_______________________________________________
Jalview-discuss mailing list
[email protected]
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
_______________________________________________
Jalview-discuss mailing list
[email protected]
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
_______________________________________________
Jalview-discuss mailing list
[email protected]
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
