A brief update: The alignment running problems with Jalview are now fixed.
If anyone reading this ever has a problem with any of the Jalview webservices, please do let us know. We do have automatic testing of the services but sometimes error conditions happen that are not identified by these tests. Thanks again, Geoff. On 16/03/2018 12:12, Geoff Barton wrote: Dear Héctor, Sorry you have been having problems doing alignments in Jalview. I've just tried it, it was slow, but did come back with an alignment. There were some problems with our cluster over the last few days which may have caused what you are seeing. Please try again and ideally post your experience on the jalview-discuss mailing list. Incidentally, were you aware that you can do the alignments locally by installing JABAWS? For instructions, please see: www.compbio.dundee.ac.uk/jabaws<http://www.compbio.dundee.ac.uk/jabaws>. With thanks, Geoff. On 16/03/2018 11:52, Héctor Montero wrote: Hello, I want to align 37 sequences (input by plain text) in Jalview using the function Muscle by default. When I do this, the job appears a queuing endlessly and after a while, an error message appears. This does not happen when I input a few sequences. So I want to ask you how can I instead input an alignment already performed in Muscle into Jalview. Apparently I cannot just copy and paste the results I got in Muscle because they are not continuous. Thanks Hector -- Héctor Montero Sommerfeld -- Geoff Barton | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________ Jalview-discuss mailing list Jalview-discuss@jalview.org<mailto:Jalview-discuss@jalview.org> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss -- Geoff Barton | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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