Did you do the following on Windows? 1. click the big green arrow that is in the top right of the www.jalview.org<http://www.jalview.org> page
2. download and save the installation file for windows 3. double click the file and follow the instructions - most people can just click OK to everything. This should work OK and end up with you having a Jalview icon on the desktop. When you click on this icon it starts Jalview. I just tried it on an old Windows 8 installation and it worked. Ben Soares who developed the new installer and others in the group here have tested it on several versions of winows up to and including Windows 10. If you are still having problems, please let us know (1) which version of Windows you are running on and (2) exactly the steps you followed. With thanks, Geoff. P.S. I have copied this reply to jalview-discuss since others may also be having problems installing on windows. We know many people are successfully using 2.11 on windows so your problems might be very specific to a particular version of windows or to the steps you followed. On 18/08/2019 19:08, Héctor Montero wrote: Yes, I want to install version 2.11 in windows On Sun, 18 Aug 2019 at 18:28, Geoff Barton <gjbar...@dundee.ac.uk<mailto:gjbar...@dundee.ac.uk>> wrote: Hi Héctor, You are trying to install Version 2.11? Which operating system are you using? Windows/mac/Linux? Geoff. Sorry for multiple mails - I wanted to reply to the list but messed it up. Geoff. On 18/08/2019 18:26, Geoff Barton wrote: On 18/08/2019 17:15, Héctor Montero wrote: Hello Geoff, what is the next step after downloading the installer. I ended up with Install4j in my computer with no clue what to do next. Thanks On Fri, Mar 16, 2018 at 3:23 PM Geoff Barton <gjbar...@dundee.ac.uk<mailto:gjbar...@dundee.ac.uk>> wrote: A brief update: The alignment running problems with Jalview are now fixed. If anyone reading this ever has a problem with any of the Jalview webservices, please do let us know. We do have automatic testing of the services but sometimes error conditions happen that are not identified by these tests. Thanks again, Geoff. On 16/03/2018 12:12, Geoff Barton wrote: Dear Héctor, Sorry you have been having problems doing alignments in Jalview. I've just tried it, it was slow, but did come back with an alignment. There were some problems with our cluster over the last few days which may have caused what you are seeing. Please try again and ideally post your experience on the jalview-discuss mailing list. Incidentally, were you aware that you can do the alignments locally by installing JABAWS? For instructions, please see: www.compbio.dundee.ac.uk/jabaws<http://www.compbio.dundee.ac.uk/jabaws>. With thanks, Geoff. On 16/03/2018 11:52, Héctor Montero wrote: Hello, I want to align 37 sequences (input by plain text) in Jalview using the function Muscle by default. When I do this, the job appears a queuing endlessly and after a while, an error message appears. This does not happen when I input a few sequences. So I want to ask you how can I instead input an alignment already performed in Muscle into Jalview. Apparently I cannot just copy and paste the results I got in Muscle because they are not continuous. Thanks Hector -- Héctor Montero Sommerfeld -- Geoff Barton | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________ Jalview-discuss mailing list Jalview-discuss@jalview.org<mailto:Jalview-discuss@jalview.org> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss -- Geoff Barton | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 -- Héctor Montero Sommerfeld -- Geoff Barton, FRSE FRSB | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 _______________________________________________ Jalview-discuss mailing list Jalview-discuss@jalview.org<mailto:Jalview-discuss@jalview.org> http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss -- Geoff Barton, FRSE FRSB | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096 -- Héctor Montero Sommerfeld -- Geoff Barton, FRSE FRSB | Professor of Bioinformatics | Head of Division of Computational Biology School of Life Sciences | University of Dundee, Scotland, UK | g.j.bar...@dundee.ac.uk<mailto:g.j.bar...@dundee.ac.uk> Tel: +44 1382 385860 | www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> | twitter: @gjbarton The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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