We use some on the edge for think like specific xml parsing but nothing near the core. BioJava looks interesting though. Might play with it at some stage.
manfred Manfred Moser http://www.mosabuam.com skype: mosabua http://www.linkedin.com/in/manfredmoser On Saturday September 27 2008, phidias51 wrote: > Manfred, > Are you using any open source bioinformatics libraries like > biojava? > > Mark > > On Sep 26, 10:10 pm, Manfred Moser <[EMAIL PROTECTED]> wrote: > > As you can see from our website we have a thick client as well as > > a web app. The thick client is a webstarted Swing app. > > > > Other components are JBoss, Spring, Hibernate... and lots more as > > you can imagine. > > > > Manfred Moserhttp://www.mosabuam.com > > skype: mosabuahttp://www.linkedin.com/in/manfredmoser > > > > On Friday September 26 2008, phidias51 wrote: > > > Hi Manfred, > > > Sounds interesting, although my wife's not that interested in > > > moving to BC. I am curious about what Java technologies you're > > > using through. > > > > > > I've been experimenting with creating a Grails-based LIMS > > > lately and it's definitely easier. > > > > > > Mark > > > > > > On Sep 20, 11:20 pm, Manfred Moser <[EMAIL PROTECTED]> wrote: > > > > Well. When it comes to Java and Genomics (or Proteomics...) I > > > > can tell you that Genologics uses Java pretty much > > > > exclusively for their LIMS. (Disclaimer... I work there). We > > > > do have integration with Affymetrix too. Although we are bit > > > > further north than the Bay Area.. all the way in BC ;-) > > > > > > > > Nevertheless our website should be interesting to you > > > > > > > >http://www.genologics.com/ > > > > > > > > manfred > > > > > > > > PS: and yes.. we are hiring too ;-) > > > > -- > > > > Manfred Moser > > > > Vancouver Island Java User Grouphttp://www.mosabuam.com/vijug > > > > skype: mosabuahttp://www.linkedin.com/in/manfredmoser > > > > > > > > On Friday September 19 2008, phidias51 wrote: > > > > > I know that 23andMe uses a python-based platform and I was > > > > > curious if Navigenics uses Java? I seem to recall hearing > > > > > that Navigenics uses Affymetrix SNP arrays, do you know if > > > > > there's a Java-based library to make accessing that data > > > > > easier. I suppose, if worse-came-to-worse, you could > > > > > always use JNI/JNA to interface with their native library. > > > > > > > > > > Does Navigenics make use of any open source tools like > > > > > R/Bioconductor for array analysis? > > > > > > > > > > Given that a lot of bioinformatics-related tasks are done > > > > > through scripting (traditionally Perl or Python), I was > > > > > wondering if you had noticed any uptake in Java-based > > > > > scripting languages like Groovy either at work or in the > > > > > Bay Area bioinformatics community? > > > > > > > > > > --Mark > > > > > > > > > > PS. Saw this interesting animation that shows how > > > > > microarray-based SNP testing works. > > > > >http://bioisolutions.blogspot.com/2008/06/microarray-method- > > > > >for- gen etic-testing.html > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "The Java Posse" group. To post to this group, send email to [email protected] To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/javaposse?hl=en -~----------~----~----~----~------~----~------~--~---
