Though your vision might be just and correct, I managed to implement it as a 
simple app: I defined one class which creates threadable processes. Each 
process that has to be started will be fired as a new thread. This works quite 
safe as each new thread starts a new execution, though it isn't within the main 
process anymore. The basic idea was to create 'subprocesses' (splitted multiple 
transitions/nodes that work on a specific task and then merge into one node 
afterwards). As I want to keep the whole thing plain simple, I won't make use 
of Hibernate, databases or Job Executor. So I guess I'm forced to create my own 
implementation then.

Perhaps in the future, someday a simple fork will be available where each 
splitted transaction is a thread just for one transition :).

Thanks for your input anyway!

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