I may be wrong in that analysis, looking further.  I'd assumed conf/ is 
recursively loaded. 

bootstrap.xml does not directly reference the bootstrap/profile.xml any more.  
There's a bootstrap-minimal.xml and bootstrap-norepo.xml that do reference it 
though.

If the VFSDeploymentScanner isn't actually being used (I'll check in my logs in 
a minute), then I don't know what the problem is.  But I'm still seeing the 
problem.

And something is causing deploy/myapp.rails to go through structure recognition 
before HDScanner does its first run.  Structure recognition is coming after my 
JEP installation.

But I'm still ending up with a FileHandler'd archive if myapp.rails is in 
deploy/ at boot time, but getting a correctly handled vfszip if HDScanner picks 
it up post-boot.

I'll keep digging.

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