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Since https://github.com/boostorg/boost.git is using submodules, I think you'll need to experiment with various settings, or you may even need to add the Pre-scm build step plugin and insert a pre-SCM build step which performs a
When git clean is passed two "f" options and the "d" option, it cleans untracked directories as well as untracked files. Refer to http://git-scm.com/docs/git-clean for more details.