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As far as I can tell from the command output, the "git fetch" command itself is reporting on its "stderr" that it could not create the .ssh directory.
The git client plugin uses the command line git implementation, and is thus connected to bugs which may exist in the command line git implementation. In this case, the command line implementation appears to have a race condition where it attempts to create a directory that already exists.
You will probably need to take this sort of bug to the msysgit community for a fix. There is not much which the git client plugin can do to prevent the problem.
You could experiment with JGit to see if it shows the same issues, and if it behaves any better in your use case. There are still feature gaps in the JGit portion of the git client plugin, but it is worth a "test drive" to see if it will meet your use cases.