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We are having the same issue here. Unfortunately it looks like the problem is persistent and doesn't occur only sometimes.
We are on Jenkins 1.563
17:32:25 [WARNINGS] Parsing warnings in console log with parser MSBuild 17:32:39 ERROR: Publisher hudson.plugins.warnings.WarningsPublisher aborted due to exception 17:32:39 java.io.IOException: remote file operation failed: <path> at hudson.remoting.Channel@8da12db:<remote host> 17:32:39 at hudson.FilePath.act(FilePath.java:916) 17:32:39 at hudson.FilePath.act(FilePath.java:893) 17:32:39 at hudson.plugins.warnings.WarningsPublisher.annotate(WarningsPublisher.java:461) 17:32:39 at hudson.plugins.warnings.WarningsPublisher.parseConsoleLog(WarningsPublisher.java:407) 17:32:39 at hudson.plugins.warnings.WarningsPublisher.perform(WarningsPublisher.java:322) 17:32:39 at hudson.plugins.analysis.core.HealthAwareRecorder.perform(HealthAwareRecorder.java:333) 17:32:39 at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) 17:32:39 at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:745) 17:32:39 at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:709) 17:32:39 at hudson.model.Build$BuildExecution.post2(Build.java:182) 17:32:39 at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:658) 17:32:39 at hudson.model.Run.execute(Run.java:1731) 17:32:39 at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43) 17:32:39 at hudson.model.ResourceController.execute(ResourceController.java:88) 17:32:39 at hudson.model.Executor.run(Executor.java:231) 17:32:39 Caused by: java.io.IOException: Remote call on <remote host> failed 17:32:39 at hudson.remoting.Channel.call(Channel.java:748) 17:32:39 at hudson.FilePath.act(FilePath.java:909) 17:32:39 ... 14 more 17:32:39 Caused by: java.lang.Error: Failed to deserialize the Callable object. 17:32:39 at hudson.remoting.UserRequest.perform(UserRequest.java:104) 17:32:39 at hudson.remoting.UserRequest.perform(UserRequest.java:48) 17:32:39 at hudson.remoting.Request$2.run(Request.java:326) 17:32:39 at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72) 17:32:39 at java.util.concurrent.FutureTask.run(Unknown Source) 17:32:39 at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) 17:32:39 at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) 17:32:39 at hudson.remoting.Engine$1$1.run(Engine.java:58) 17:32:39 at java.lang.Thread.run(Unknown Source) 17:32:39 Caused by: java.lang.ClassCastException: cannot assign instance of hudson.plugins.analysis.util.TreeString to field hudson.plugins.analysis.util.model.AbstractAnnotation.fileName of type hudson.plugins.analysis.util.TreeString in instance of hudson.plugins.warnings.parser.Warning 17:32:39 at java.io.ObjectStreamClass$FieldReflector.setObjFieldValues(Unknown Source) 17:32:39 at java.io.ObjectStreamClass.setObjFieldValues(Unknown Source) 17:32:39 at java.io.ObjectInputStream.defaultReadFields(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readSerialData(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject0(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject(Unknown Source) 17:32:39 at java.util.HashSet.readObject(Unknown Source) 17:32:39 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) 17:32:39 at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) 17:32:39 at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) 17:32:39 at java.lang.reflect.Method.invoke(Unknown Source) 17:32:39 at java.io.ObjectStreamClass.invokeReadObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readSerialData(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject0(Unknown Source) 17:32:39 at java.io.ObjectInputStream.defaultReadFields(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readSerialData(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject0(Unknown Source) 17:32:39 at java.io.ObjectInputStream.defaultReadFields(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readSerialData(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject0(Unknown Source) 17:32:39 at java.io.ObjectInputStream.defaultReadFields(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readSerialData(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject0(Unknown Source) 17:32:39 at java.io.ObjectInputStream.readObject(Unknown Source) 17:32:39 at hudson.remoting.UserRequest.deserialize(UserRequest.java:182) 17:32:39 at hudson.remoting.UserRequest.perform(UserRequest.java:98) 17:32:39 ... 8 more