Hi!
I know you like me!
I got the following message: *** Error during code generation - please
report this error on the JiBX users list so that the condition can be
caught during validation ***
-----
What I did?
I have dbReferenceList both in my 'main' tag and a 'child' tag in my xml
file:
ENTRY.dbReferenceList
ENTRY.organism.dbReferenceList
So I wanted to reuse the SPdbRefence abstract binding.
First I implemented the entry.organism.dbRefList, when it was working
fine. Now I created the entry.dbRefList binding and fails with the error
message shown at the bottom.
Thanks in advance! (And really sorry!)
Tamas
==========================================================================
<!-- MAIN mapping -->
<mapping name="entry"...
<collection field="organismList">
<structure
map-as="org.biohegedus.biodb.bindings.SPorganism"></structure>
</collection>
<!--withouth the following collection is was working fine -->
<collection field="dbReferenceList">
<structure
type="org.biohegedus.biodb.bindings.SPdbReference"></structure>
</collection>
</mapping>
<!-- ORGANISM mapping -->
<mapping name="organism" class="org.biohegedus.biodb.bindings.SPorganism">
<namespace uri="http://biohegedus.org/biodb/bindings";
default="elements"/>
...
<collection field="dbReferenceList">
<structure name="dbReference"
type="org.biohegedus.biodb.bindings.SPdbReference"></structure>
</collection>
...
</mapping>
<!-- SPdbReference mapping -->
<mapping class="org.biohegedus.biodb.bindings.SPdbReference"
abstract="true">
<namespace uri="http://biohegedus.org/biodb/bindings";
default="elements"/>
<collection field="propertyList">
<structure
map-as="org.biohegedus.biodb.bindings.SPproperty"></structure>
</collection>
<value name="type" field="type" usage="required" style="attribute"/>
<value name="id" field="id" usage="required" style="attribute"/>
<value name="evidence" field="evidence" usage="optional"
style="attribute"/>
<value name="key" field="key" usage="required" style="attribute"/>
</mapping>
=====================================================
ERROR:
---------------------
[java] Error running binding compiler
[java] *** Error during code generation - please report this error
on the JiBX users list so that the condition can be caught during
validation ***
[java] java.lang.IllegalStateException: Internal error: Expected
org.biohegedus.biodb.bindings.SPdbReference on stack, found
java.util.ArrayList
[java] full stack:
[java] 0: java.util.ArrayList
[java] 1: java.util.ArrayList
[java] 2: org.jibx.runtime.impl.UnmarshallingContext
[java] at
org.jibx.binding.classes.MethodBuilder.verifyCompatible(MethodBuilder.java:393)
[java] at
org.jibx.binding.classes.MethodBuilder.verifyCallStack(MethodBuilder.java:495)
[java] at
org.jibx.binding.classes.MethodBuilder.appendCallVirtual(MethodBuilder.java:852)
[java] at
org.jibx.binding.def.ObjectBinding.genUnmarshalCall(ObjectBinding.java:538)
[java] at
org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding.java:793)
[java] at
org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.java:905)
[java] at
org.jibx.binding.def.ComponentProperty.genContentUnmarshal(ComponentProperty.java:191)
[java] at
org.jibx.binding.def.PassThroughComponent.genContentUnmarshal(PassThroughComponent.java:111)
[java] at
org.jibx.binding.def.NestedCollection.genContentUnmarshal(NestedCollection.java:143)
[java] at
org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding.java:757)
[java] at
org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.java:905)
[java] at
org.jibx.binding.def.ComponentProperty.genContentUnmarshal(ComponentProperty.java:236)
[java] at
org.jibx.binding.def.NestedStructure.genContentUnmarshal(NestedStructure.java:156)
[java] at
org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding.java:757)
[java] at
org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.java:905)
[java] at
org.jibx.binding.def.ElementWrapper.genContentUnmarshal(ElementWrapper.java:272)
[java] at
org.jibx.binding.def.MappingDefinition.generateCode(MappingDefinition.java:565)
[java] at
org.jibx.binding.def.DefinitionContext.generateCode(DefinitionContext.java:604)
[java] at
org.jibx.binding.def.BindingDefinition.generateCode(BindingDefinition.java:611)
[java] at org.jibx.binding.Compile.compile(Compile.java:305)
[java] at org.jibx.binding.Compile.main(Compile.java:384)
--
Tamas Hegedus, PhD | phone: (1) 919-966 0329
UNC - Biochem & Biophys | fax: (1) 919-966 5178
5007A Thurston-Bowles Bldg | mailto:[EMAIL PROTECTED]
Chapel Hill, NC, 27599-7248 | http://biohegedus.org
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