Re: [jibx-users] IllegalStateException

Fri, 23 Sep 2005 05:24:01 -0700 

Yes, I already tried.
I also tried a clean build...
:-(

Mocky Habeeb wrote:

So long as entry has a field dbReferenceList that is different and
distinct from dbReferenceList in organism, then that shouldn't cause you
any problems. In that case they are completely different fields. So I
don't know what your problem is. Have you tried changing "map-as=" to
"type=" in your first structure?

Mocky

-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Tamas
Hegedus
Sent: Thursday, September 22, 2005 5:56 PM
To: [email protected]
Subject: [jibx-users] IllegalStateException


Hi!

I know you like me!
I got the following message: *** Error during code generation - please report this error on the JiBX users list so that the condition can be caught during validation *** 

-----
What I did?
I have dbReferenceList both in my 'main' tag and a 'child' tag in my xml

file:

ENTRY.dbReferenceList
ENTRY.organism.dbReferenceList

So I wanted to reuse the SPdbRefence abstract binding.
First I implemented the entry.organism.dbRefList, when it was working fine. Now I created the entry.dbRefList binding and fails with the error 

message shown at the bottom.

Thanks in advance! (And really sorry!)
Tamas

========================================================================
==
<!-- MAIN mapping -->
<mapping name="entry"...
    <collection field="organismList">
<structure map-as="org.biohegedus.biodb.bindings.SPorganism"></structure> 
    </collection>

    <!--withouth the following collection is was working fine -->
    <collection field="dbReferenceList">
<structure type="org.biohegedus.biodb.bindings.SPdbReference"></structure> 
    </collection>

</mapping>

<!-- ORGANISM mapping -->
<mapping name="organism"
class="org.biohegedus.biodb.bindings.SPorganism">
<namespace uri="http://biohegedus.org/biodb/bindings"; default="elements"/> 
     ...
     <collection field="dbReferenceList">
<structure name="dbReference" type="org.biohegedus.biodb.bindings.SPdbReference"></structure> 
     </collection>
     ...
</mapping>

<!-- SPdbReference mapping -->
<mapping class="org.biohegedus.biodb.bindings.SPdbReference" abstract="true"> <namespace uri="http://biohegedus.org/biodb/bindings"; default="elements"/> 
     <collection field="propertyList">
<structure map-as="org.biohegedus.biodb.bindings.SPproperty"></structure> 
     </collection>
     <value name="type" field="type" usage="required"
style="attribute"/>
     <value name="id" field="id" usage="required" style="attribute"/>
<value name="evidence" field="evidence" usage="optional" style="attribute"/> 
     <value name="key" field="key" usage="required" style="attribute"/>
</mapping>

=====================================================
ERROR:
---------------------
      [java] Error running binding compiler

      [java] *** Error during code generation - please report this error
on the JiBX users list so that the condition can be caught during validation ***
[java] java.lang.IllegalStateException: Internal error: Expected org.biohegedus.biodb.bindings.SPdbReference on stack, found java.util.ArrayList 
      [java]  full stack:
      [java]   0: java.util.ArrayList
      [java]   1: java.util.ArrayList
      [java]   2: org.jibx.runtime.impl.UnmarshallingContext
[java] at org.jibx.binding.classes.MethodBuilder.verifyCompatible(MethodBuilder.ja 
va:393)
[java] at org.jibx.binding.classes.MethodBuilder.verifyCallStack(MethodBuilder.jav 
a:495)
[java] at org.jibx.binding.classes.MethodBuilder.appendCallVirtual(MethodBuilder.j 
ava:852)
[java] at org.jibx.binding.def.ObjectBinding.genUnmarshalCall(ObjectBinding.java:5 
38)
[java] at org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding 
.java:793)
[java] at org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.jav 
a:905)
[java] at org.jibx.binding.def.ComponentProperty.genContentUnmarshal(ComponentProp 
erty.java:191)
[java] at org.jibx.binding.def.PassThroughComponent.genContentUnmarshal(PassThroug 
hComponent.java:111)
[java] at org.jibx.binding.def.NestedCollection.genContentUnmarshal(NestedCollecti 
on.java:143)
[java] at org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding 
.java:757)
[java] at org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.jav 
a:905)
[java] at org.jibx.binding.def.ComponentProperty.genContentUnmarshal(ComponentProp 
erty.java:236)
[java] at org.jibx.binding.def.NestedStructure.genContentUnmarshal(NestedStructure 
.java:156)
[java] at org.jibx.binding.def.ObjectBinding.genUnmarshalContentCall(ObjectBinding 
.java:757)
[java] at org.jibx.binding.def.ObjectBinding.genContentUnmarshal(ObjectBinding.jav 
a:905)
[java] at org.jibx.binding.def.ElementWrapper.genContentUnmarshal(ElementWrapper.j 
ava:272)
[java] at org.jibx.binding.def.MappingDefinition.generateCode(MappingDefinition.ja 
va:565)
[java] at org.jibx.binding.def.DefinitionContext.generateCode(DefinitionContext.ja 
va:604)
[java] at org.jibx.binding.def.BindingDefinition.generateCode(BindingDefinition.ja 
va:611)
      [java]     at org.jibx.binding.Compile.compile(Compile.java:305)
      [java]     at org.jibx.binding.Compile.main(Compile.java:384)




--
Tamas Hegedus, PhD          | phone: (1) 919-966 0329
UNC - Biochem & Biophys     | fax:   (1) 919-966 5178
5007A Thurston-Bowles Bldg  | mailto:[EMAIL PROTECTED]
Chapel Hill, NC, 27599-7248 | http://biohegedus.org


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