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https://issues.apache.org/jira/browse/ARROW-14839?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17451291#comment-17451291
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Antoine Pitrou commented on ARROW-14839:
----------------------------------------
It looks genuine, thank you. I think I'll report a bug to Snappy.
> [R] test-fedora-r-clang-sanitizer job failing due to snappy causing a
> sanitizer error
> -------------------------------------------------------------------------------------
>
> Key: ARROW-14839
> URL: https://issues.apache.org/jira/browse/ARROW-14839
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Reporter: Nicola Crane
> Priority: Major
> Labels: pull-request-available
> Time Spent: 1h 10m
> Remaining Estimate: 0h
>
> [A recent build
> failure|https://dev.azure.com/ursacomputing/crossbow/_build/results?buildId=16168&view=logs&j=0da5d1d9-276d-5173-c4c4-9d4d4ed14fdb&t=d9b15392-e4ce-5e4c-0c8c-b69645229181&l=12205]
> We could consider mentioning this upstream to the snappy project. They
> [explicitly support
> clang|https://github.com/google/snappy/blob/master/CONTRIBUTING.md] clang. I
> have confirmed (locally, by setting {{ARROW_VERBOSE_THIRDPARTY_BUILD=ON}}
> that snapy 1.1.9 definitely is being installed (which we bumped in
> ARROW-14594).
> We might also try building with the master branch of snappy (which can be
> accomplished by changing
> https://github.com/apache/arrow/blob/master/cpp/thirdparty/versions.txt#L80-L81
> to point to the master branch tar.gz.
> {code}
> #7 0x7f39908049c0 in arrow::util::internal::(anonymous
> namespace)::SnappyCodec::Decompress(long, unsigned char const*, long,
> unsigned char*) /arrow/cpp/src/arrow/util/compression_snappy.cc:56:10
> #8 0x7f398f1489d7 in parquet::(anonymous
> namespace)::SerializedPageReader::DecompressIfNeeded(std::__1::shared_ptr<arrow::Buffer>,
> int, int, int) /arrow/cpp/src/parquet/column_reader.cc:492:3
> #9 0x7f398f144897 in parquet::(anonymous
> namespace)::SerializedPageReader::NextPage()
> /arrow/cpp/src/parquet/column_reader.cc:404:11
> #10 0x7f398f1ab37f in parquet::(anonymous
> namespace)::ColumnReaderImplBase<parquet::PhysicalType<(parquet::Type::type)5>
> >::ReadNewPage() /arrow/cpp/src/parquet/column_reader.cc:595:31
> #11 0x7f398f1aaf04 in parquet::(anonymous
> namespace)::ColumnReaderImplBase<parquet::PhysicalType<(parquet::Type::type)5>
> >::HasNextInternal() /arrow/cpp/src/parquet/column_reader.cc:575:12
> #12 0x7f398f2130ef in parquet::internal::(anonymous
> namespace)::TypedRecordReader<parquet::PhysicalType<(parquet::Type::type)5>
> >::ReadRecords(long) /arrow/cpp/src/parquet/column_reader.cc:1227:18
> #13 0x7f398efbe8d8 in parquet::arrow::(anonymous
> namespace)::LeafReader::LoadBatch(long)
> /arrow/cpp/src/parquet/arrow/reader.cc:467:46
> #14 0x7f398efe86db in parquet::arrow::ColumnReaderImpl::NextBatch(long,
> std::__1::shared_ptr<arrow::ChunkedArray>*)
> /arrow/cpp/src/parquet/arrow/reader.cc:108:5
> #15 0x7f398efce3a2 in parquet::arrow::(anonymous
> namespace)::FileReaderImpl::ReadColumn(int, std::__1::vector<int,
> std::__1::allocator<int> > const&, parquet::arrow::ColumnReader*,
> std::__1::shared_ptr<arrow::ChunkedArray>*)
> /arrow/cpp/src/parquet/arrow/reader.cc:273:20
> #16 0x7f398efda5bc in parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4::operator()(unsigned long,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>) const
> /arrow/cpp/src/parquet/arrow/reader.cc:1180:5
> #17 0x7f398efdb2e7 in
> std::__1::enable_if<((!(std::is_void<arrow::Result<std::__1::shared_ptr<arrow::ChunkedArray>
> > >::value)) &&
> (!(is_future<arrow::Result<std::__1::shared_ptr<arrow::ChunkedArray> >
> >::value))) && ((!(arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray>
> >::is_empty)) ||
> (std::is_same<arrow::Result<std::__1::shared_ptr<arrow::ChunkedArray> >,
> arrow::Status>::value)), void>::type
> arrow::detail::ContinueFuture::operator()<parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>&,
> arrow::Result<std::__1::shared_ptr<arrow::ChunkedArray> >,
> arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >
> >(arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>&) const
> /arrow/cpp/src/arrow/util/future.h:148:23
> #18 0x7f398efdb2e7 in
> decltype(std::__1::forward<arrow::detail::ContinueFuture&>(fp)(std::__1::forward<arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray>
> >&>(fp0), std::__1::forward<parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&>(fp0), std::__1::forward<unsigned
> long&>(fp0),
> std::__1::forward<std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>&>(fp0)))
> std::__1::__invoke<arrow::detail::ContinueFuture&,
> arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >&,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>&>(arrow::detail::ContinueFuture&,
> arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >&,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl>&)
> /usr/bin/../include/c++/v1/type_traits:3899:1
> #19 0x7f398efdb0a5 in
> std::__1::__bind_return<arrow::detail::ContinueFuture,
> std::__1::tuple<arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4, unsigned long,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl> >, std::__1::tuple<>,
> __is_valid_bind_return<arrow::detail::ContinueFuture,
> std::__1::tuple<arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4, unsigned long,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl> >, std::__1::tuple<>
> >::value>::type std::__1::__bind<arrow::detail::ContinueFuture,
> arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >&,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl> >::operator()<>()
> /usr/bin/../include/c++/v1/functional:2886:20
> #20 0x7f398efdb0a5 in arrow::internal::FnOnce<void
> ()>::FnImpl<std::__1::__bind<arrow::detail::ContinueFuture,
> arrow::Future<std::__1::shared_ptr<arrow::ChunkedArray> >&,
> parquet::arrow::(anonymous
> namespace)::FileReaderImpl::DecodeRowGroups(std::__1::shared_ptr<parquet::arrow::(anonymous
> namespace)::FileReaderImpl>, std::__1::vector<int, std::__1::allocator<int>
> > const&, std::__1::vector<int, std::__1::allocator<int> > const&,
> arrow::internal::Executor*)::$_4&, unsigned long&,
> std::__1::shared_ptr<parquet::arrow::ColumnReaderImpl> > >::invoke()
> /arrow/cpp/src/arrow/util/functional.h:152:42
> #21 0x7f39907017d7 in arrow::internal::FnOnce<void ()>::operator()() &&
> /arrow/cpp/src/arrow/util/functional.h:140:17
> #22 0x7f39907002f5 in
> arrow::internal::WorkerLoop(std::__1::shared_ptr<arrow::internal::ThreadPool::State>,
> std::__1::__list_iterator<std::__1::thread, void*>)
> /arrow/cpp/src/arrow/util/thread_pool.cc:177:11
> #23 0x7f39906ffd0b in
> arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::$_3::operator()()
> const /arrow/cpp/src/arrow/util/thread_pool.cc:344:7
> #24 0x7f39906ffd0b in
> decltype(std::__1::forward<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::$_3>(fp)())
>
> std::__1::__invoke<arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::$_3>(arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::$_3&&)
> /usr/bin/../include/c++/v1/type_traits:3899:1
> #25 0x7f39906ff62c in void*
> std::__1::__thread_proxy<std::__1::tuple<std::__1::unique_ptr<std::__1::__thread_struct,
> std::__1::default_delete<std::__1::__thread_struct> >,
> arrow::internal::ThreadPool::LaunchWorkersUnlocked(int)::$_3> >(void*)
> /usr/bin/../include/c++/v1/thread:291:5
> #26 0x7f39a0e0c3f8 in start_thread (/lib64/libpthread.so.0+0x93f8)
> #27 0x7f39a0c4f4c2 in clone (/lib64/libc.so.6+0x1014c2)
> SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior
> /tmp/RtmpZTvzHP/file587026c727/snappy_ep-prefix/src/snappy_ep/snappy.cc:351:43
> in
> > head(df)
> {code}
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