Bugs item #957730, was opened at 2004-05-20 17:52
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You can respond by visiting:
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Category: File Input/Output
Group: HEAD
Status: Open
Resolution: None
Priority: 5
Submitted By: Ming Hua (minghua)
Assigned to: Nobody/Anonymous (nobody)
Summary: Can't import some .xyz files
Initial Comment:
Jmol v10 (and CVS) can't import some of the .xyz files
I am using. Attached is a sample .xyz file. Jmol v9
can import and show it without any problem.
The error message I got for CVS HEAD in Jmol console:
--- 8< ---
java.lang.ArrayIndexOutOfBoundsException: 4
at
org.openscience.jmol.viewer.datamodel.Bspt$Leaf.<init>(Bspt.java:439)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.<init>(Bspt.java:362)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:369)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:373)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:373)
at
org.openscience.jmol.viewer.datamodel.Bspt$Node.addTuple(Bspt.java:367)
at
org.openscience.jmol.viewer.datamodel.Bspt.addTuple(Bspt.java:94)
at
org.openscience.jmol.viewer.datamodel.Bspf.addTuple(Bspf.java:56)
at
org.openscience.jmol.viewer.datamodel.Frame.initializeBspf(Frame.java:585)
at
org.openscience.jmol.viewer.datamodel.Frame.rebond(Frame.java:692)
at
org.openscience.jmol.viewer.datamodel.Frame.freeze(Frame.java:106)
at
org.openscience.jmol.viewer.datamodel.FrameBuilder.buildFrame(FrameBuilder.java:107)
at
org.openscience.jmol.viewer.managers.ModelManager.setClientFile(ModelManager.java:81)
at
org.openscience.jmol.viewer.JmolViewer.openClientFile(JmolViewer.java:970)
at
org.openscience.jmol.viewer.JmolViewer.getOpenFileError1(JmolViewer.java:954)
at
org.openscience.jmol.viewer.JmolViewer.getOpenFileError(JmolViewer.java:939)
at
org.openscience.jmol.viewer.script.Eval.load(Eval.java:1473)
at
org.openscience.jmol.viewer.script.Eval.instructionDispatchLoop(Eval.java:336)
at
org.openscience.jmol.viewer.script.Eval.run(Eval.java:280)
at java.lang.Thread.run(Thread.java:534)
Model.finalize() called
--- >8 ---
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