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On Tuesday 01 June 2004 13:27, Bob Hanson wrote:
> http://www.stolaf.edu/people/hansonr/jmol/models
>
> Two are there--H2O and 2-hydroxybutanone
>
> Note that there are several options for MOPAC output files.
> "xyz coordinates" is one of them. Are you reading the internal coord or
> the xyz coord?

XYZ only at this moment.

> Also, I have done some work similar to this using Chime. See
>
> http://www.stolaf.edu/people/hansonr/imt/js/ir/C5H10O2/

Nice. Have you tried to convert this to a Jmol page?

> One of the things that I have noticed in other apps that is very
> annoying is the overexaggeration of the vibrational movements. Are you
> allowing for that to be an adjustable display parameter--how vigorous to
> make the vibration? 

Yes, I think so... (at least I discussed it with Miguel...)

> Also, how will jmol determine the actual vibrational
> display frequency? (Or are we talking here about just vector
> descriptions, not actual animations?)

Miguel?

Egon

- -- 
[EMAIL PROTECTED]
PhD on Molecular Representation in Chemometrics
Nijmegen University
http://www.cac.sci.kun.nl/people/egonw/
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