I had had no problems with the coexistence of Jmol and RasTop but after I first started RasTop beta I got a RasTop.exe not fond error 9 times, every time before the Jmol window opened:
$ java -jar Jmol.jar splash_image=jar:file:/C:/htdocs/Jmol/Jmol.jar!/org/openscience/jmol/images/Jmol_splash.jpg using Smarter Model Adapter (C) 2004 The Jmol Development Team Jmol Version 10pre11e 2004/07/12 15:37 java.vendor:Sun Microsystems Inc. java.version:1.5.0-beta2 os.name:Windows XP
now I was asked 9 times 'Fehlende Verkn�pfung' (missing link) for the location of RasTop.exe, and regardless what my answer to this question was Cancel or Look for and I located RasTop.exe, after the nine times this error pops up, the Jmol window opens.
If I use
Dokument
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every time I tried to change the directory (double click on it), I was asked one time for the RasTop.exe location, regardless whether up or down the path. PDB or CIF files load normally and I had no further problems.
Now, I solved the problem. While writing about this, the 'missing link to RasTop.exe' error message was on my screen for a long time, it suddenly disappeared and a new message 'found RasTop.exe' pops up with tree choices, correct link, delete link, and cancel (if I remember right:-). I choose delete link and that solved my trouble.
Regards, Jan
P.S. about the association of surfaces, I suggest, they should be associated with the nearest associated atom.
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