Hi,
I checked out and built this morning, so I am pretty sure I am using
the latest.
If the first file I read is the gaussian/H2O.out file, I see the two
Gaussian orientations of the molecules on the screen at the same
time. The AtomSetChooser allows me to easily pick one over the other
(or the rewind button). If I then read a different file it does
indeed only show the first frame, and when I go back to the H2O.out
it also shows the first frame (as it should). Not sure what is going
on here, but I thought I'd report it.
Initially I started this message because of the preview button not
showing previews of the files to be loaded anymore, but it seems now
that that is caused by exceptions thrown in the preview-caused-
reading of the files (before they are 'opened'). Thus I ran into some
other spartan files that seem to cause problems:
spartan/spartan01.txt:
FileManager.openFile(/Users/rkanters/Projects/Eclipse/Jmol-datafiles/
spartan/spartan01.txt)
SmarterJmolAdapter:The Resolver thinks:Spartan
AtomSetCollection.freeze called
openFile(/Users/rkanters/Projects/Eclipse/Jmol-datafiles/spartan/
spartan01.txt) 89 ms
java.lang.ArrayIndexOutOfBoundsException: 16
at org.jmol.adapter.smarter.AtomSetCollection.getAtomSetAuxiliaryInfo
(AtomSetCollection.java:487)
at
org.jmol.adapter.smarter.SmarterJmolAdapter.getAtomSetAuxiliaryInfo
(SmarterJmolAdapter.java:157)
at org.jmol.viewer.Frame.<init>(Frame.java:142)
at org.jmol.viewer.ModelManager.setClientFile(ModelManager.java:76)....
Then I need to restart Jmol.... because it doesn't load anything else
(I dot get some userAction output in the console...)
spartan/benzenevib.smol
just opening this one gives:
FileManager.openFile(/Users/rkanters/Projects/Eclipse/Jmol-datafiles/
spartan/benzenevib.smol)
SmarterJmolAdapter:The Resolver thinks:SpartanSmol
Reading BEGINARCHIVE GEOMETERY atom records...
Reading PROPARC properties records...
reading VIBFREQ vibration records: freqCount = 30
java.lang.ArrayIndexOutOfBoundsException: 256
at org.jmol.adapter.smarter.SpartanSmolReader.readVibFreqs
(SpartanSmolReader.java:186)
at org.jmol.adapter.smarter.SpartanSmolReader.readProperties
(SpartanSmolReader.java:92)
at org.jmol.adapter.smarter.SpartanSmolReader.readAtomSetCollection
(SpartanSmolReader.java:43)
at org.jmol.adapter.smarter.Resolver.resolve(Resolver.java:59)
at org.jmol.adapter.smarter.SmarterJmolAdapter.openBufferedReader
(SmarterJmolAdapter.java:56)
at org.jmol.viewer.FileManager$FileOpenThread.openReader
(FileManager.java:424)
at org.jmol.viewer.FileManager$FileOpenThread.openInputStream
(FileManager.java:417)
at org.jmol.viewer.FileManager$FileOpenThread.run(FileManager.java:394)
at org.jmol.viewer.FileManager.openFile(FileManager.java:94)
at org.jmol.viewer.Viewer.openFile(Viewer.java:929)
at org.jmol.viewer.Eval.load(Eval.java:1778)
at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:396)
at org.jmol.viewer.Eval.run(Eval.java:335)
at java.lang.Thread.run(Thread.java:552)
AtomSetCollection.freeze called
error opening /Users/rkanters/Projects/Eclipse/Jmol-datafiles/spartan/
benzenevib.smol
Could not read file:java.lang.ArrayIndexOutOfBoundsException: 256
openFile(/Users/rkanters/Projects/Eclipse/Jmol-datafiles/spartan/
benzenevib.smol) 132 ms
ScriptException:Could not read
file:java.lang.ArrayIndexOutOfBoundsException: 256
Script line:load /Users/rkanters/Projects/Eclipse/Jmol-datafiles/
spartan/benzenevib.smol
René
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