On Wednesday 28 June 2006 15:11, Bob Hanson wrote:
> colors/transparency:
>
> The simplest thing to do is to assign an arbitrary id to the isosurface:
>
> isosurface item1 center {1.0 2.0 3.0} ellipsoid {1 0 0 0.5} .....
> isosurface item2 center (within(molecule,atomno=3)) scale 5.0 ellipsoid
> {1 0 0 0.5} ....What do I need to fill in for the dots? Nothing seems to work... > and then refer to that using the $name notation: > > color $item1 transparent yellow This crashes Jmol... in such a way that I can no longer rotate the molecule, nor can I enter new commands in the console... > color $item2 green This worked. > some of this is done in > <http://www.stolaf.edu/people/hansonr/jmol/test/proto/isosurface.htm> This seems to be down at the moment... Egon -- [EMAIL PROTECTED] Cologne University Bioinformatics Center (CUBIC) Blog: http://chem-bla-ics.blogspot.com/ GPG: 1024D/D6336BA6 Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
