You want just dots? Then:
isosurface delete; isosurface center {2 2 2} resolution 2 sphere 2.0
dots nofill
The trick is that you need the "resolution 2" BEFORE generating the
sphere, and since there is no identifier. If you provide an identifier:
isosurface delete; isosurface myiso dots nofill center {2 2 2}
resolution 2 sphere 2.0
then the dots/nofill can appear anywhere after that, because Jmol knows
then that you are referring to THIS isosurface and not some other.
Egon Willighagen wrote:
>On Wednesday 28 June 2006 15:11, Bob Hanson wrote:
>
>
>>colors/transparency:
>>
>>The simplest thing to do is to assign an arbitrary id to the isosurface:
>>
>>isosurface item1 center {1.0 2.0 3.0} ellipsoid {1 0 0 0.5} .....
>>isosurface item2 center (within(molecule,atomno=3)) scale 5.0 ellipsoid
>>{1 0 0 0.5} ....
>>
>>
>
>What do I need to fill in for the dots? Nothing seems to work...
>
>
>
>>and then refer to that using the $name notation:
>>
>>color $item1 transparent yellow
>>
>>
>
>
>
>This crashes Jmol... in such a way that I can no longer rotate the molecule,
>nor can I enter new commands in the console...
>
>
>
I can't imagine why that would be any problem -- maybe try that again
with the latest version (10.x.18). Maybe you picked up a bad file.
>>color $item2 green
>>
>>
>
>This worked.
>
>
>
>>some of this is done in
>><http://www.stolaf.edu/people/hansonr/jmol/test/proto/isosurface.htm>
>>
>>
>
>This seems to be down at the moment...
>
>
>
yes, all day, unfortunately.
>Egon
>
>
>
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