Bugs item #1197508, was opened at 2005-05-07 21:05 Message generated for change (Settings changed) made by hansonr You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1197508&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Scripting Group: None >Status: Closed >Resolution: Rejected Priority: 3 Submitted By: molvisions (molvisions) >Assigned to: Bob Hanson (hansonr) Summary: select none causes monitors to disappear Initial Comment: hi, using the latest CVS build, monitor [num1] [num2] select none causes the monitor to disappear. selecting any set that contains the two atoms shows the monitor again. I think this is a bug; monitor visibilty should not be controlled by simple selection. tim <[EMAIL PROTECTED]> ---------------------------------------------------------------------- Comment By: molvisions (molvisions) Date: 2005-05-08 10:19 Message: Logged In: YES user_id=920824 er, I've narrowed it down a bit, and gotten a bit more confused at the same time ;-). this only happens when a monitor is drawn between two alpha carbons of a backbone/cartoon shape. I think we spoke about this issue a while ago - monitors between atoms that aren't rendered. IIRC you convinced me that the endpoints must be rendered in order to draw a monitor, and that is still acceptable. AFAICT this is just a strange side effect. if I send this script to the JmolApplet, assuming atoms 1 and 2 are alpha carbons: restrict none select all backbone 0.3 set monitors off set monitors 0.2 color monitors white select none set display selected select atomno=1,atomno=2 monitor 1 2 delay 2.0 select none the monitor line appears, and two seconds later disappears. if I go back and issue a 'select all' via the Console, the monitor comes back. I can toggle the visibility of this monitor using select none/all commands *as long as set display selected is true.* if I set display normal, no monitor. I confirmed this in Jmol.app. same behavior - I can toggle the monitor line even when the endpoints are not rendered by issuing 'set display selected' and 'select all' or any set that includes either endpoint (does not have to be both). some kind of short-circuit between set display and monitors/measurements perhaps? I don't think this is a crucial issue. I can certainly get around it easily enough. in the meantime, I'll look into whether or not the set display code is interacting with monitors at all. tim d <[EMAIL PROTECTED]> ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1197508&group_id=23629 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
