On Sep 22, 2006, at 10:25 PM, Bob Hanson wrote:

> Tim and others,
>
> I downloaded the DRuMS package, and it seems to me you have done  
> exactly
> what needs to be done -- a script for each scheme. I don't think we
> could do any differently making this "native" other than simply saving
> those files within the applet and applying them as scripts. This  
> amounts
> to almost no space at all (2K), but I think the thing to discuss is
> whether that's really the best thing to do. Wouldn't it be smartest to
> leave them as they are as resources that could be read if desired,
> modified by users as desired (I see you already have that in mind with
> the "RNA options" that are there), and just loaded as scripts as  
> needed?
> Do we really want to hardwire them into Jmol?
>
hi Bob,

these can certainly remain as external scripts; Eric has made some  
tweaks, and I imagine Angel has done some nice work as well.  I  
suggested adding DRuMS natively to Jmol for two reasons:

1. external scripts are flexible, but not nearly as easy to apply as  
a built-in command set.  this is especially applicable to naive users.

2. I think Jmol would benefit from some expansion of the basic  
Rasmolian color scheme set.  it would be nice to have built-in  
commands equivalent to color structure, color shapely, etc.  i.e.,  
color molecule, color polarity, color charge, color hydrophobicity,  
and so on.  since we put some significant thought into DRuMS, I  
thought it a good place to start.

if it is a painful addition to make, I'm willing to drop it.


best,

tim
-- 
Timothy Driscoll                                em: [EMAIL PROTECTED]
molvisions - see. grasp. learn.                 ph: 919-368-2667
<http://www.molvisions.com/>                    im: molvisions
usa:virginia:blacksburg                         tx: [EMAIL PROTECTED]

"Anyone who considers arithmetical methods of producing random digits  
is, of course, in a state of sin."  - J von Neumann



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