Bob Hanson wrote:
>OK, I couldn't resist...
>
>hide (atom expression)
>
>joins "restrict" but does it much more nicely -- without messing with
>bond/atom/cartoon size parameters. Instead of setting the size to 0 to
>make it disappear, "hide" just sets a flag that says "don't display it"
>-- so it is 100% reversible, and you can "hide none" to have it all come
>back the way it was.
>
>It's an atom-based setting, so group-based objects such as cartoons and
>such are hidden iff their "lead atom" is hidden.
>
>I remember suggesting this quite a while back, but I forgot to make my
>own feature request. Just a little use myself and I am convinced I will
>never use "restrict" again!
>
>
This will really be useful for our Jmol interface at the FLI, thanks!
I wanted to try it but it seems not present in the zip file available at
"http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/"; yet.
Q: How do I unhide only the selected part?
While trying version 10.9.74 I noticed that the "frame all" command
seems to be broken if there are really several frames present in a PDB
file. I get the following error message from the applet before it
freezes totally:
java.lang.ArrayIndexOutOfBoundsException: -1
at org.jmol.viewer.Mmset.getGroupCountInModel(Mmset.java:315)
at org.jmol.viewer.Frame.getGroupCountInModel(Frame.java:909)
at
org.jmol.viewer.ModelManager.getGroupCountInModel(ModelManager.java:297)
at org.jmol.viewer.Viewer.getGroupCountInModel(Viewer.java:1491)
at org.jmol.popup.JmolPopup.updateModelSetInfoMenu(JmolPopup.java:266)
at org.jmol.popup.JmolPopup.updateComputedMenus(JmolPopup.java:115)
at
org.jmol.applet.Jmol$MyStatusListener.notifyFrameChanged(Jmol.java:759)
at
org.jmol.viewer.StatusManager.setStatusFrameChanged(StatusManager.java:155)
at org.jmol.viewer.Viewer.setStatusFrameChanged(Viewer.java:2586)
at
org.jmol.viewer.RepaintManager.setDisplayModelIndex(RepaintManager.java:57)
at org.jmol.viewer.Viewer.setDisplayModelIndex(Viewer.java:1970)
at org.jmol.viewer.Eval.frame(Eval.java:3631)
at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:580)
at org.jmol.viewer.Eval.script(Eval.java:2849)
at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:471)
at org.jmol.viewer.Eval.runEval(Eval.java:104)
at org.jmol.viewer.Viewer.evalStringWaitStatus(Viewer.java:2267)
at org.jmol.viewer.ScriptManager.runScript(ScriptManager.java:130)
at org.jmol.viewer.ScriptManager.runNextScript(ScriptManager.java:119)
at
org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(ScriptManager.java:146)
at java.lang.Thread.run(Thread.java:534)
Regards,
Rolf
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