Dear Robert,

We would like to display how a molecular geometry changed during 
minimizations/MD simulations running on our server. The MD program continuously 
updates the input file (in pdb format) saved on the server. We use jmolApplet 
to display the model ( jmolApplet([800,600],'load <?php echo "$filename"; ?>; 
');) .

Thank you very much 

Junmei




On Monday, December 2, 2013 8:40 PM, Robert Hanson <hans...@stolaf.edu> wrote:
 
What is changing the coordinates? Not a file load? 

Applet or Application? 

JavaScript timeout with Jmol.script(appletid, "refresh")  ?






On Mon, Dec 2, 2013 at 8:25 PM, Junmei Wang <junmw...@yahoo.com> wrote:

Dear Developers,
>
>
>I wonder if there is a way or command to refresh the display of a model when 
>the coordinates are changed. I am interested in display a model dynamically 
>whose coordinates are changed probably every second. 
>
>
>I have tried to clear cache before reload the model, but apparently, Jmol 
>memorizes the initial molecular information and the display of the model does 
>not change at all, although the coordinates have already been changed.
>
>
>Is there a way for jmol to handle my problem?
>
>
>Thanks 
>
>
>
>Junmei
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-- 

Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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