Most likely your browser is caching the file and it is not being updated.
Add a meaningless attribute such as ?_23348972394 that changes every time
the file is loaded using a random number.


 jmolApplet([800,600],'load <?php echo "$filename"."?_".rand(); ?>; ');

(Sorry if my PHP is off there; I'm sure you  get the idea.)



On Mon, Dec 2, 2013 at 10:22 PM, Junmei Wang <junmw...@yahoo.com> wrote:

> Dear Robert,
>
> We would like to display how a molecular geometry changed during
> minimizations/MD simulations running on our server. The MD program
> continuously updates the input file (in pdb format) saved on the server. We
> use jmolApplet to display the model ( jmolApplet([800,600],'load <?php echo
> "$filename"; ?>; ');) .
>
> Thank you very much
>
> Junmei
>
>
>
>   On Monday, December 2, 2013 8:40 PM, Robert Hanson <hans...@stolaf.edu>
> wrote:
>  What is changing the coordinates? Not a file load?
>
> Applet or Application?
>
> JavaScript timeout with Jmol.script(appletid, "refresh")  ?
>
>
>
>
> On Mon, Dec 2, 2013 at 8:25 PM, Junmei Wang <junmw...@yahoo.com> wrote:
>
> Dear Developers,
>
> I wonder if there is a way or command to refresh the display of a model
> when the coordinates are changed. I am interested in display a model
> dynamically whose coordinates are changed probably every second.
>
> I have tried to clear cache before reload the model, but apparently, Jmol
> memorizes the initial molecular information and the display of the model
> does not change at all, although the coordinates have already been changed.
>
> Is there a way for jmol to handle my problem?
>
> Thanks
>
> Junmei
>
>
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>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>


-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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