jr wrote: > the RasMol 2.7.2.1 online help says: [ ... ]
on load, RasMol uses the CONECT record stored in the PDB file,> if there are none, RasMol calculates the connection information.
Is that still part of the online help or your own opinion? It's certainly not the experience we had with our versions of Rasmol. The program always seemed to do some bond calculating. The tricky bit is this sentence from the manual -
> This is the method used to determine bonding, if necessary, > when a molecule is first read in using the 'load' command.
- especially the "when necessary" bit. We used Rasmol 2.6, but I think we looked at 2.7 versions as well, and we had examples with CONECT in the file where extra bonds were added or bonds in the file not shown (don't remember which). Maybe our atom coordinates were just too "unchemical". We were actually showing graphs "as" molecules.
Sebastian
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