> As already mentioned, if the element is not detected right.
> I fear, this will eventually be the case with alternate location atoms?
I apologize Jan, this must have been one of the things that I did not
understand correctly in your previous email.

> But if the bond determining algorithm is nearly perfect (knowledge about
>  non- and standard residues, atom radii, bond angle),
Unfortunately, the bond algorithm is quite simple. And I don't think that
Jmol is the place to build a nearly perfect bonding algorithm.

I will implement it as you suggest. And if we find cases where it is doing
the wrong thing then we will address the problems at that time.

Miguel






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