>> I see some stero bonds ... there is currently some code to support >> triangular 'wedges' for stereo bonds, but that is all there is. > > That's all I need.
I'm not sure thats *all* you need :-) > I don't see how that code would be useful in > a 3D structure, though. I put it in because I was working on the bond code and we do hope to support 2D at some point down the road. > It would be very useful with 2D where the z coordinate is zero, > and all carbons not displayed. All carbons not displayed is easy. If you make the z coordinate zero and stick it in a .xyz/.pdb/.mol file then, as far as I am concerned, it is 3D. And it will display just fine. But ... your end users will be able to rotate it in 3D ... not sure that is what you want. (And, somehow we have to flag these stereo bonds.) >> Hmmm ... not sure what you are asking ... closed-source + open to >> public access. > > It's a patent database, with free public access. (I'm used to > open source as a user, the corporate hat is a novelty to me, > so I'm trying to not doing something foolish inadvertedly). Hmmm ... Patent database ... in the US? Europe? Do you want to display patented chemical structures? You have a lot of lawyers there who are 'experts' on intellectual property rights. In all seriousness, I would *love* to have an intellectual property attorney read the Gnu Lesser Public License and interpret it in the context of your request. Some personal random thoughts/comments (without having reread the GLPL and without having talked with other Jmol team members) - I need a little more information and would need to understand the database/web application a little more. - If the database is 100% publicly accessible and public funded, then I would say 'probably yes' - if the database is private, with both commercial and public access, then I would say 'maybe ... we can probably work something out' In either case, the Jmol team probably needs to come up with a 'powered-by-Jmol' logo/link for applications like yours :-) Miguel > >> Since we don't do 2D, maybe it isn't relevant yet. >> >> > In case Jmol is the wrong solution for above profile, I'd be very >> thankful for suggestions. >> >> Unfortunately, I'm not a chemist and I'm not familiar with other >> molecular visualization tools (other than Jmol :-) >> >> Perhaps someone else can help. > > Thanks for your help. > > -- Eugen* Leitl <a href="http://leitl.org";>leitl</a> > ______________________________________________________________ > ICBM: 48.07078, 11.61144 http://www.leitl.org > 8B29F6BE: 099D 78BA 2FD3 B014 B08A 7779 75B0 2443 8B29 F6BE > http://moleculardevices.org http://nanomachines.net -------------------------------------------------- Miguel Howard [EMAIL PROTECTED] c/Pe�a Primera 11-13 esc dcha 6B 37002 Salamanca Espa�a Spain -------------------------------------------------- telefono casa 923 27 10 82 movil 650 52 54 58 -------------------------------------------------- To call from the US dial 9:00 am Pacific US = home 011 34 923 27 10 82 12:00 noon Eastern US = cell 011 34 650 52 54 58 6:00 pm Spain -------------------------------------------------- ------------------------------------------------------- This SF.net email is sponsored by: SF.net Giveback Program. Does SourceForge.net help you be more productive? Does it help you create better code? SHARE THE LOVE, and help us help YOU! Click Here: http://sourceforge.net/donate/ _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
