On Wednesday 19 November 2003 14:51, Eugen Leitl wrote:
> 1) Can I display 2D structures from CML2 similiar to Marvin or
> other structure editors? (I only need to display, not to edit).

No, but JChemPaint can... have a look at jchempaint.sf.net, which is the 2D 
counterpart of Jmol...

> 1.5) if yes, can Jmol display bond properties such as
>
> <cml title="bondArray example">
>   <bondArray>
>     <bond id="b1" atomRefs2="a3 a8" order="D">
>       <electron bondRef="b1"/>
>       <bondStereo>C</bondStereo>
>     </bond>
>     <bond id="b2" atomRefs2="a3 a8" order="S">
>       <bondStereo convention="MDL" conventionValue="6"/>
>     </bond>
>   </bondArray>
> </cml>

Yes, in principle it can... or otherwise, very easy to add... Both Jmol and 
JChemPaint use the CML library of CDK (cdk.sf.net), which is very easy to 
modify *and* extend for custom needs...

> 2) Can I use Jmol in a closed-source product (albeit open to public
> access)?

Yes, Jmol uses the LGPL license which allows it to be used in closed-source 
products. However, if you need to make changes to Jmol itself, e.g. new 
display features, those have to be open source. But not your closed source 
wrapper and tools around it. Those do *not* have to be open source.

> In case Jmol is the wrong solution for above profile, I'd be very thankful
> for suggestions.

Egon

-- 
[EMAIL PROTECTED]
PhD on Molecular Representation in Chemometrics
Nijmegen University
http://www.cac.sci.kun.nl/people/egonw/
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