at 2.38p EDT on 2003 November 28 Friday Miguel Howard said:

> >>Do the 4 characters in the file actually say "FE2+" ?
> >>
> >>
> > we should have a primitive for this and should be able to do something
> > like select charge >= 2
> This would be very easy to add
> 
charge should be considered when calculating the radius of the atom as
well.  for example, Fe2+ should have a different radius than Fe3+.


> 
> > RasMol 2.7.2.1 handles them according to the molecule parameter. In
> > the sequence, they are loaded, they were assigned numbers 1 to 5. You
> > address which molecule is used for transformation or rendering by
[...]
> 
> This looks like a good extension to the scripting language.
> 
I lost the original part of this discussion - does RasMol use molecule to
refer to different models in an NMR structure?

I ask because I am not convinced that 'model' and 'molecule' should be
interchangeable.  if this is what RasMol 2.7 does, maybe someone can try
and convince me why - in my mind, one can have multiple 'models' of the
same molecule.  :-)


regards,

:tim

-- 
timothy driscoll
molvisions - molecular graphics & visualization
<http://www.molvisions.com/>
usa:north carolina:wake forest


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