> The H-bond capability in Jmol 10 is very cool! Glad you like it. > For an applet example of > a fairly intricate small molecule H-bond example, see > > http://macxray.chem.upenn.edu/1162hb.html > The H-bond capability can even be used to fake a unit cell packing > diagram. E.g, see > > http://macxray.chem.upenn.edu/cell457.html
Neither link worked for me ... JmolApplet not found ... perhaps you were/are making changes. > Is there any way to vary the appearance of the dashed H-bonds, e.g., to > make them solid lines or dotted lines? Hmmm ... I am reluctant to go there ... but you might be able to convince me ... but only if you *really* want to use them as hbonds. RasMol/Chime renders hbonds as solid cylinders if they are any larger than wireframe. That doesn't make sense to me since they are not covalent bonds. That is why I made them these dashed/segmented cylinders. If what you *really* want to use them for is to construct unit cells, then we should talk about that. I need to build in better support for unit cell rendering. So I think that we have more flexibility in the rendering and representation. > Is it possible to preset some of the atom and bond size parameters so > the applet display comes up with non-default values, immediately? We used to have that ... then I took it out ... looks like I need to put it back in :-) > As part of the development of the full version 10, are some of the > problems with reading shelxl .res files being worked on? E.g., the > mis-reading of the unit cell angles. Version 7 reads the angles as > gamma, alpha, beta rather than alpha, beta, gamma and version 8 > displays the cell angles as radians rather than degrees. Don't know ... I am not familiar with that part of the code and I haven't looked at it. Miguel ------------------------------------------------------- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
