The PDB file-format is an *extremely* poor one for use in a more expressive crystallographic environment. It works for proteins, but as far as the more complicated crystallography questions? I'd not recommend trying to force other information into that format. A far more flexible format, that works just as well for proteins, is CIF (I assume you are all aware that the PDB is able to supply CIF format files for all PDB entries, and these have the property of being corrected as well -- what a concept! <g>).
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