> The PDB file-format is an *extremely* poor one for use in a more
> expressive crystallographic environment. It works for proteins, but as
> far as the more complicated crystallography questions? I'd not recommend
> trying to force other information into that format.

Understood.

> A far more flexible
> format, that works just as well for proteins, is CIF (I assume you are
> all aware that the PDB is able to supply CIF format files for all PDB
> entries, and these have the property of being corrected as well -- what
> a concept! <g>).

Yes.

In the best of all possible worlds, I personally would stay away from the
file format questions and stick to functionality. But that is not going to
happen.

CDK has some support for CIF (and maybe mmCIF) already.

I suppose I need to look into CIF and mmCIF.


Miguel





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