>>Q: Does Chime display something different from what RasMol displays? >> > no, but no Model info
I suggest that Jmol show the model number. >>Q: *Exactly* what appears in the status bar when one clicks on an atom in >>Chime? >> > using 1az0 which still behaves strange in Jmol > http://www.imb-jena.de/cgi-bin/SCOPlnk.exe?JMOL=1az0&SCOP=SCOP%201.65 > > RasMol: > Atom: CA 4070 Hetero: CA 283 > or if there is a chain, > Atom: CA 1834 Group: LYS 245 Chain: A > and if there would be a Model, > Atom: CA 1834 Group: LYS 245 Chain: A Model: 1 > would be added > > Chime status line looks just the same, but didn't show any Model info > Atom: CA 4070 Hetero: CA 283 > Atom: CA 1834 Group: LYS 245 Chain: A > > Jmol:Hoover, I think it would be a nice idea to add the residue number > e.g. CA [CA]283 > CA [CA] It is not clear to me where you want to add this residue number. > Jmol:pickCallBack, the numbers are still wrong > atom 4065 > CA CA 72448 Chain: > Jmol:Status > CA CA 72448 Chain: Yes ... I introduced that bug when I put in support for insertion codes. 27448 / 256 == 283 >>Q: Does it depend upon whether or not there are multiple models loaded? >> >> > no, but if there is model information RasMol will display it OK. Jmol will display the model too. >>Q: What does Chime display >> >> > Chime does not display model information, which I consider as bug. Agreed. >>>2. In CHIME, clicking on an atom in a protein makes the atom number etc >>appear in the browser status bar, for all structure renderings >>(wireframe, >>>spacefill etc) . However with the JMol applet atom number etc is >>displayed >>>only for ball and stick, spacefill, but not for wireframe, cartoon or >>stick. Is there a way to enable the labelling with wireframes, cartoons >>and stick rendering? >> >>Jmol should be reporting the atom number in the case of wireframe, if >> not, >>then it is a bug. >> >> > numbering in Jmol should be fixed with priority, because you can't do > interactive select without the correct pickCallBack information. I will try to do it today. >>I was not aware that Chime reported atom/group numbers when one clicked >> on >>a cartoon (or other secondary structure shape). >> >> > it does It does not look like RasMol supports this ... Q: Please confirm that RasMol does *not* have this behavior. >>That will be a little more difficult to do ... but I am sure that we can >>get it done. It turns out that it is very expensive to correctly solve this problem with 100% accuracy. I suspect that Chime is using some 'approximation' to guess which residue of a cartoon/trace was clicked on. Q: Does anyone have any ideas/guesses as to how Chime decides which residue was selected? >>Q: *Exactly* what is reported in the status bar when one clicks on a >>cartoon? Info about the alpha carbon atom of the residue? >> >> > The same info you get clicking directly on the *.CA Q: For a nucleotide, is it the information about the phosphorus? Miguel ------------------------------------------------------- This SF.Net email is sponsored by: Oracle 10g Get certified on the hottest thing ever to hit the market... Oracle 10g. Take an Oracle 10g class now, and we'll give you the exam FREE. http://ads.osdn.com/?ad_id=3149&alloc_id=8166&op=click _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
