Miguel wrote:
I took a look at http://arapaho.nsuok.edu/~biology/Tutorials/BetaPS.htm
A small suggestion ...
Unlike Jmol/Chime, Jmol has the ability to draw hbonds with a larger diameter than 1 pixel. One can say:
hbonds 0.15
this is just like the RasMol2.7.2 command hbonds 0.15 or hbonds 45 where you get an unbroken cylinder. Regards, Jan
And one will get a 'broken cylinder' rendering with a 0.15 Angstrom radius. It works just like 'wireframe {radius}'
When looking at small chunks it can make the hbonds much easier to see.
Additionally, you can use 'color hbonds {your-favorite-color}' to separately color the hbonds to make them more visible.
Miguel
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