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On Thursday 21 October 2004 15:04, Andreas Prlic wrote:
> I want to announce yet another project that uses Jmol, called SPICE:
>
> SPICE is a DAS client that used Jmol for the 3D visualization of protein
> strucutures.  DAS, the Distributed Annotation System, provides a
> communication protocol to exchange biological annotations. 

Nice, and good that it's LGPL too. I've added a link here:

http://wiki.jmol.org/ApplicationsEmbeddingJmol

> To learn more about and try SPICE, please proceed to:
> http://www.efamily.org.uk/software/dasclients/spice/
>
> I will be happy to recieve feedback, suggestions, questions, opinions, etc.

I started the webstart link with javaws, which I thought was for webstart, 
with my local 1.5.0 install... and the first thing it did was installing 
1.4.2_06 :)

But then it proceeded... had to click away an ArrayIndexOutOfBoundsException, 
but then it showed the DAS client :)

Looks very nice... A quick comment: the highlighted AA in the Jmol window is 
with size not scaled with the zoom factor of the protein itself... i.e. when 
zooming in, the highlighted atoms seem to get smaller... what script was used 
for highlighting the 'selected' amino acid? I guess if you would have used 
spacefill 1.0 on those atoms, zooming in would work as expected...

Egon

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