-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On Thursday 21 October 2004 16:32, Andreas Prlic wrote: > > I've added a link here: > > > >http://wiki.jmol.org/ApplicationsEmbeddingJmol > > thanks!
Feel free to login on the wiki website and add additional information... possibly elaborating on how you integrated it... I think many people would be interested in that... > >I started the webstart link with javaws, which I thought was for webstart, > >with my local 1.5.0 install... and the first thing it did was installing > >1.4.2_06 :) > > hm. I had some problems with the auto install as well. For me an upgrade > from 1.3 to 1.4 on a test machine did not work and the Sun server > returned something like java version not found ... Had to do the > installation manually. Additionally, when I specified to use 1.4.2 or > 1.4.2+ in the.jnlp file, it tried to contact sun to get a new java > version, although 1.4.2 is installed ... so I put "1.4" into the jnlp > file which seemed to work. :-/ :) Thought so... would be nice if it could say >= 1.4 so that people with 1.5 don't have to get 1.4 downloaded... (though that went very nicely...) > >But then it proceeded... had to click away an > > ArrayIndexOutOfBoundsException, > > strange ... can you send me the exception? Will try to reproduce tonight... going home right now. > >but then it showed the DAS client :) > > good. > > >Looks very nice... A quick comment: the highlighted AA in the Jmol window > > is with size not scaled with the zoom factor of the protein itself... > > i.e. when zooming in, the highlighted atoms seem to get smaller... what > > script was used for highlighting the 'selected' amino acid? I guess if > > you would have used spacefill 1.0 on those atoms, zooming in would work > > as expected... > > well observed, the initial command is spacefill 2.0 to make the Metal > atoms look larger. I can try 1.0. Ok, then I think we might have found a bug... because the ratio of the trace size and the spacefill size should stay fixed... now the atoms stayed fixed while I zoomed in on the structure... I'll try if I can reproduce this in Jmol itself... Egon - -- [EMAIL PROTECTED] - --------------------------------------- CDK: http://cdk.sf.net/ JChemPaint: http://jchempaint.sf.net/ Jmol: http://www.jmol.org/ -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (SunOS) iD8DBQFBd8vmd9R8I9Yza6YRAl7VAJ9/G2JsrKJd1vmLutyXk8xZurJVSACgs1mq dOIdAyagpWuXKWp3EXx13VA= =1j0S -----END PGP SIGNATURE----- ------------------------------------------------------- This SF.net email is sponsored by: IT Product Guide on ITManagersJournal Use IT products in your business? Tell us what you think of them. Give us Your Opinions, Get Free ThinkGeek Gift Certificates! Click to find out more http://productguide.itmanagersjournal.com/guidepromo.tmpl _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
