> Rich wrote: > >> Is there a way to have unconnected atoms automatically represented as >> crosses (or something) when cpk=off? > > As I understand it, the problem you are trying to solve is that > unconnected atoms are not visible with 'cpk off; wireframe on' > > There is currently no mechanism to represent these atoms. > > Q: how do other packages deal with this?
The CCDC program Mercury puts up a cross (X) which is a pretty typical thing for small molecule graphics. > > It occurs to me that I could expose an atom property that would allow you > to select based upon bond count. In this case you could select those atoms > that have bondcount==0 and then turn on spacefill for them. > > Q: would that solve your problem? so something like: if a "wireframe on" checkbox is clicked my action script is select all; cpk off; wireframe .1; select bondcount==0; (display atoms as crosses) ?? Rich ------------------------------------------------------- The SF.Net email is sponsored by: Beat the post-holiday blues Get a FREE limited edition SourceForge.net t-shirt from ThinkGeek. It's fun and FREE -- well, almost....http://www.thinkgeek.com/sfshirt _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
