Accessing the same files and downloading again as .pdb has solved the problem all the times.
Ciao
Adriano
plugin Il giorno 16/feb/05, alle 03:45, Miguel ha scritto:
Freida wrote:
For the attached pdb file of the protein porin, "select protein" results in 0 atoms selected.
The groups are not being recognized as amino monomers.
This is because the order of the ATOM records in the groups is not what Jmol expects:
ATOM 1 C GLU 1 8.619 58.170 21.723 1.00 ATOM 2 CA GLU 1 9.227 58.724 20.432 1.00 ATOM 3 CB GLU 1 9.279 57.641 19.354 1.00 ATOM 4 CD GLU 1 7.964 55.848 18.173 1.00 ATOM 5 CG GLU 1 7.963 57.274 18.736 1.00 ATOM 6 N GLU 1 10.610 59.142 20.749 1.00 ATOM 7 O GLU 1 9.305 57.498 22.488 1.00
Files from the PDB have the first 4 atoms of each group as: N, CA, C, O
Jmol expects this ... otherwise they do not get recognized as
AminoMonomers ... and they don't get built into AminoPolymers ... so they
don't get recognized as 'protein'.
Miguel
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