We have a file representing a protein in a single chain. It contains a set of common atoms identified by alternate location ' '. There are also some atoms identified by alternate locations 'A' and 'B'.
There are two separate 'runs' of alternate location atoms. Somewhere near the beginning of the chain there is a set of 'A' atoms and an alternate set of 'B' atoms. Somewhere near the end of the chain there is another run of A/B alternates. Q: Is it the case that these two separate 'runs' of 'A' alternate locations are paired together? That is, does one generally think of these two runs of 'A' altLoc atoms go together? Q: Or, is it the case that the first 'A' run and the second 'A' run are generally considered independent of each other, and that one is just as likely to couple the first 'A' run with the second 'B' run? Miguel ------------------------------------------------------- This SF.Net email is sponsored by: NEC IT Guy Games. How far can you shotput a projector? How fast can you ride your desk chair down the office luge track? If you want to score the big prize, get to know the little guy. Play to win an NEC 61" plasma display: http://www.necitguy.com/?r _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
