> hi all,
>
> in case anyone is interested:
>
> I just came across a protein sequence alignment tool called PFAAT
> (<http://pfaat.sourceforge.net/>).  this software uses Jmol as an
> inline structure visualization module.  it looks pretty cool, and I
> can see great possibilities in the combination. (displaying aligned
> 3D structures, coloring 3D structure by alignment score, etc.)

I have had contact with the PFAAT developers.

They are planning to contribute some modifications to the Jmol source in
order to make things work better with PFAAT.


Miguel



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