Annemarie Honegger wrote: > > Hi > > As I am trying to convert various chime/rasmol scripts to jmol, I am > running into a problem: > I am predominantly working with antibody structures, which usually > use the Kabat convention > for residue numbering in the PDB files, and thus rely on the residue > insertion code, eg. > Residue number 95a:L, 95b:L ..., 100a:H, 100b:H, 100c:H.. to identify > the residues in > the variable length loops of the different chains. These scripts > fail in jmol, which appears not to understand residue > numbers such as 100a or 100A. Is there any other way to access column > 27 of the PDB record > when specifying an atom/ residue selection in jmol? > Insertion codes are specified with a "^" sign, so in your example this would be:
95^a:L, 95^b:L ..., 100^a:H, 100^b:H, 100^c:H I am not sure when this was introduced, it works at least since prerelease version 10.00.36. Regards, Rolf ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=103432&bid=230486&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
