On Thursday 02 February 2006 15:03, Frieda Reichsman wrote: > On Feb 2, 2006, at 8:55 AM, Miguel wrote: > > file format is invalid. > > > > PDB files must have records (lines) that are 80 characters long. > > > > You have a record that is short. > > It looks to me like every line in the file is short, and the header > has varying degrees of "shortness". Some as short as 67, and the atom > records are at 79. Not sure how to fix this...
A Perl script should be easy enough to write... (or any other scripting language... e.g Java :) > is there a way I can > do it that you know of, or if not is it possible for you to fix so > many lines easily, Miguel? If you're desperate, I'll write up a script that makes every line 80 characters, if shorter. BTW, make sure to file a bug report with whoever made the software that spit out this PDB file. Egon -- [EMAIL PROTECTED] PhD student on Molecular Representation in Chemometrics Radboud University Nijmegen Blog: http://chem-bla-ics.blogspot.com/ http://www.cac.science.ru.nl/people/egonw/ GPG: 1024D/D6336BA6 ------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for problems? Stop! Download the new AJAX search engine that makes searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! http://sel.as-us.falkag.net/sel?cmd=lnk&kid=103432&bid=230486&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
