Hervé, Per Egon's message ... the V3000 format is not currently supported in native Jmol. That is, the CDK reader is not used by Jmol.
Adding a new reader to Jmol is generally not difficult. You indicated that your situation was *urgent*. It would be useful for us to have some more information: Q: Are you using the Jmol application, the Jmol applet, or the Jmol viewer as a Java component? The V3000 file format allows one to store more information than many file formats ... Q: Do you need anything other than atoms, bonds, and formal charges? One way to think about this is ... would simple .xyz files or .mol files meet your needs? Q: Are you using reactions or anything like that? The format supports *wildcard* atom types that are unnamed. Jmol cannot deal with this situation ... Q: Do any of you files contain *wildcard* atoms? Miguel ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid0944&bid$1720&dat1642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
