Bob wrote: > yes, that's my preference, too.
I agree. Hydrogen bonds that are explicitly in .pdb files should display by default when the file is loaded. Width will be 1 pixel. Note: Jmol reads CONECT records, not HYDBND records ... but PDB spec says: CONECT records are generated consistent with the bond type. I believe that I have interpreted this to mean that reading the CONECT records is sufficient. > That is the former behavior of Jmol and, I > think, should continue to be. That is not the former behavior of Jmol. Up until 10.00.52, Jmol did not display hbonds by default. Default diamter was set to zero. > Jan wrote: > >> Bob Hanson wrote: >> >>> Jan, why would we not show the CONECT hbonds on start up? These are >>> defined in the PDB file same as HYDBND records. >>> >> I argue show all (CONECT) what is in the file on load, but do not show >> calculated backbone hbonds as in 10.00.52 on load. >> Regards, Jan I agree. Calculated hbonds should not show. Q: Jan, are you sure that calculated hbonds are being generated? I do not think so. Jan or Rolf, Q: Please tell me the pdb ID of a file that contains author-defined hydrogen bonds. Miguel ------------------------------------------------------- This SF.Net email is sponsored by xPML, a groundbreaking scripting language that extends applications into web and mobile media. Attend the live webcast and join the prime developer group breaking into this new coding territory! http://sel.as-us.falkag.net/sel?cmd=lnk&kid0944&bid$1720&dat1642 _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
