Hi everyone, as I've reported before, I am embedding Jmol into Bioclipse [1], and currently fixing the CDK-Jmol interface (the CdkJmolAdapter). The secondary structure is again propagated to Jmol, now that the adapter implements the StructureIterator. However, the secondary structure is not shown yet; which, I think, has to do with the fact the my AtomIterator is not fully compatible yet... 'select protein' selects 0 atoms for any PDB file.
Which AtomIterator field need to be setup correctly to have Jmol detect atoms as protein atoms? Egon 1.http://www.bioclipse.net/ -- Radboud University Nijmegen http://www.cac.science.ru.nl/ blog: http://chem-bla-ics.blogspot.com/ ------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
