Alan,

> I found Bob's table radii.xls and notice that if you ask for "spacefill 
> ionic" 
> jmol tries to use the ionic radius for the valence state listed in
> the CIF file. If it doesn't find that valence state in the table,
> it apparently uses the van der Waals radius. Since radii.xls only
> contains one valence state for each atom, jmol will sometimes fail
> to find the appropriate ionic radius and use instead a mixture of
> ionic and very different van der Waals radii.

My recollection (may be wrong) was that atomic radius is used, not 
vdW, if the ionic state is not found. I haven't checked it, though.
Take a look at 
http://biomodel.uah.es/jmol/radii/jmol_radii.en.html
which may be of help to you.

I also think there is provision for more than one ionic state per 
element (as shown in the periodic table above)



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