Rolf Huehne wrote: >Bob Hanson wrote: > > >>Jmol users interested in using Jmol for more than viewing: >> >>I have added some new command-line options. >> >>What do you think of this? (Using the applicatoin from a Windows command >>prompt) >> >> >>Create a JVXL file directly >>--------------------------- >> >> Jmol -ionx iso.spt myfile.xyz > myfile.jvxl >> >>where: >> >>-i,--silent silent startup operation >>-o,--noconsole no console -- all output to sysout >>-n,--nodisplay no display (much faster) >>-x,--exit run script and exit >> >>iso.spt is: >> >> isosurface solvent;show isosurface >> >> >>creates a JVXL solvent surface file. >> >> >> >> >> ><snip> > > >>You get the idea. I just uploaded the code; coming in 10.9.66; suggestions? >> >> >> >> >This is really great! >As someone who works with Unix/Linux systems for more than ten years I >highly appreciate the power of command-line tools (without disregarding >that of mouse-driven tools). > >Currently we are using rasmol as command-line tool to build our site >environment database (a database containing a list of residues inside a >specific distance for all active sites named in PDB files from the >Protein Data Bank). I have not tried it yet but I guess we could now use >Jmol for this instead. > >Currently we are generating all automatically generated images for our >PDB atlas pages (http://www.fli-leibniz.de/IMAGE.html) using rasmol as >command-line tool. Most of the currently manually generated images are >created already using our Jmol viewer. We would really prefer to use >Jmol also for the automatic image generation. > >Q: Is it already possible or might it be possible in the future to >export a script generated view as an image file with Jmol as a >command-line tool? > > > Oh, my. Such a GREAT idea!!!!
>Regards, >Rolf > >------------------------------------------------------------------------- >Take Surveys. Earn Cash. Influence the Future of IT >Join SourceForge.net's Techsay panel and you'll get the chance to share your >opinions on IT & business topics through brief surveys -- and earn cash >http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV >_______________________________________________ >Jmol-users mailing list >Jmol-users@lists.sourceforge.net >https://lists.sourceforge.net/lists/listinfo/jmol-users > > ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys -- and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
