yes, that's right. A test page is at

http://www.stolaf.edu/academics/chemapps/jmol/docs/examples/scaletest.htm


Angel Herraez wrote:

> Hi Eric
>
> I think you can get what you want using "set scale3d"
> I've used it before to compare the size of different proteins
> ( http://biomodel.uah.es/model1j/prot/tamano.htm it's in Spanish, but 
> you can get the feel; just choose proteins from the drop-down list on 
> the right)
>
> I have done some tests and the value of scale3d needed is equal to
> 72 x (dimension in angstroms) / (dimension in pixels)
>
> e.g., with "set scale3d 3.6", 300 pixels correspond to 3.6 x 300 / 72 
> = 15 Å.
> or for a molecule measuring 40 Å to ocuppy 200 pixels, you must use 
> "set scale3d 14.4"   (= 72 x 40 / 200).
>
> Good luck
>
>  
>
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